Publications

  • Wright, A.D., Sampson, M.B., Neuffer, M.G., Michalczuk, L., Slovin, J.P. and Cohen, J.D. Indole-3-acetic acid biosynthesis in the mutant maize orange pericarp, a tryptophan auxotroph. Science 254:998-1000 (1991)
  • Zhao Y., Christensen S.K., Fankhauser C., Cashman J.R., Cohen J.D., Weigel D. and Chory J.  A role for flavin monooxygenase-like enzymes in auxin biosynthesis.  Science 291:306-309 (2001)
  • Ribnicky, D.M., Cohen, J.D., Hu, W.-S. and Cooke, T.J. An extraordinary auxin surge following fertilization in carrot: Its significance for plant totipotency. Planta 214: 505-509 (2002)
  • Epstein E, Cohen JD, Slovin JP The biosynthetic pathway for indole-3-acetic acid changes during tomato fruit development. Plant Growth Regulation 38:15-20 (2002)
  • Cohen JD, Slovin JP and Hendrickson AM Two genetically discrete pathways convert tryptophan to auxin: more redundancy in auxin biosynthesis.  Trends in Plant Science 8:197-199 (2003)
  • Keller CP,Stahlberg R, Barkawi LS, and Cohen JDLong-term inhibition by auxin of leaf blade expansion in bean (Phaseolus vulgaris) and Arabidopsis thalianaPlant Physiol 134: 1217-1226 (2004)
  • Cooke TJ, Poli DB, Cohen JD Did auxin play a crucial role in the evolution of novel body plans during the Late Silurian-Early Devonian radiation of land plants?  In: The Evolution of Plant Physiology: From Whole Plants to Ecosystems. AR Hemsley and I Poole, eds. Linnean Society of London and Elsevier Academic Press, Amsterdam pp. 85-107 (2004)
  • Normanly J, Slovin JP, Cohen JD  Auxin biosynthesis and metabolism.  In: Plant Hormones: Biosynthess, Signal Transduction, Action! (3rd edition).  P.J. Davies, ed.  Kluwer Academic Publ., Dordrecht, pp. 36-62 (2004)
  • Kunkel BN, Agnew J, Collins J, Cohen JD, Chen Z Molecular genetic analysis of AvrRpt2 activity in promoting virulence ofPseudomonas syringae. In: Genomic and Genetic Analysis of Plant Parasitism and Defense, S Tsuyumu, T Shiraishi, T Wolpert, JE Leach (Eds), APS Press, pp 92-102 (2005)
  • Ilic N, Cohen JD Synthesis of [13C]-isotopomers of indole and tryptophan for use in the analysis of indole-3-acetic acid biosynthesis.  J Labelled Compd Radiopharm 47: 635-646 (2004)
  • Chou JC, Welch WH, Cohen JD. His-404 and His-405 are essential for enzyme catalytic activities of a bacterial indole-3-acetyl-L-aspartic acid hydrolase. Plant Cell Physiol. 45:1335-1341 (2004)
  • Ilic N, Habus I, Barkawi LS, Park S, Stefanic Z, Kojic-Prodic B, Cohen JD, Magnus V Aminoethyl-substituted indole-3-acetic acids for the preparation of tagged and carrier-linked auxin.  Bioorganic and Medicinal Chemistry 13:3229-3240 (2005)
  • Iyer M, Slovin JP, Epstein E, Cohen JD Transgenic tomato plants with a modified ability to synthesize – indole 3-acetyl-b-1-O-D-glucose.  J Plant Growth Regul 24:142-152 (2005)  
  • Ludwig-Müller J, Walz A, Slovin JP, Epstein E, Cohen JD, Dong W, Town CD. Overexpression of maize IAGLU in Arabidopsis thaliana alters plant growth and sensitivity to IAA but not IBA and 2,4-D. J Plant Growth Regul 24:127-141 (2005)
  • Nagpal P, Ellis CM, Weber H, Ploense SE, Barkawi LS, Guilfoyle TJ, Hagen G, Alonso JM, Cohen JD, Farmer EE, Ecker JR, Reed JW Auxin response factors ARF6 and ARF8 promote jasmonic acid production and flower maturation. Development 132:4107-4118 (2005)
  • Engelen-Eigles G, Holden G, Cohen JD, Gardner G The effect of temperature, photoperiod, and light quality on gluconasturtiin concentration in watercress (Nasturtium officinale R. Br). J Agric Food Chem 54:328-334 (2006)
  • Stoll DR, Cohen JD and Carr PW Fast, comprehensive online two-dimensional high performance liquid chromatography through the use of high temperature ultra-fast gradient elution reversed-phase liquid chromatography. J Chromatogr A 1122:123-137. (2006)
  • Porter SEG, Stoll DR, Rutan SC, Carr PW, Cohen JD  Analysis of four-way two-dimensional liquid chromatography-diode array data: Application to metabolomics. Anal Chem 78:5559-5569 (2006)
  • Barkawi LS, Tam YY, Tillman JA, Pederson B, Calio J, Al-Amier H, Emerick M, Normanly J, Cohen JD A high-throughput method for the quantitative analysis of indole-3-acetic acid and other auxins from plant tissue. Analytical Biochemistry 372:177-188 (2008)
  • Chen Z, Agnew JL, Cohen JD, He P, Shan L, Sheen J, Kunkel BN.  The Pseudomonas syringae type III effector AvrRpt2 altersArabidopsis thaliana auxin physiology. Proc Natl Acad Sci USA 104:20131-20136 (2007)
  • Tsuda K, Sato M, Glazebrook J, Cohen JD,  Katagiri F Interplay between MAMPs-triggered and SA-mediated defense responses. Plant J 53: 763-775 (2008)
  • Walz A, Seidel C, Rusak G, Park S, Cohen JD, Ludwig-Müller J  Heterologous expression of IAP1, a seed protein from bean modified by indole-3-acetic acid, in Arabidopsis thaliana and Medicago truncatulaPlanta 227:1047-1061 (2008)
  • Cohen JD, Park S, Slovin JP An auxin-conjugated strawberry fruit protein. In F Takeda, ed, Proceedings of the 2007 North American Strawberry Symposium. ASHS, Alexandria, VA, pp 108-111 (2008)
  • Yamaguchi I, Cohen JD, Culler AH, Quint M, Slovin JP, Nakajima M, Yamaguchi S, Sakakibara H, Kuroha T, Hirai N, Yokota T, Ohta H, Kobayashi Y, Mori H, Sakagami Y. Plant Hormones. In Comprehensive Natural Products II Chemistry and Biology; Mander, L., Lui, H.-W., Eds.; Elsevier: Oxford, Vol 4, pp.9–125 (2010) [Culler AH, Quint M, Slovin JP, Cohen JD.  Plant Hormones, Auxins. In    , L., Lui, H.-W., Eds.; Elsevier: Oxford, 2010; Vol 4, pp.13–24 (2010)]
  • Skirpan A, Culler AH, Gallavotti A, Jackson D, Cohen JD, McSteen P BARren inflorescence2 interaction with ZmPIN1a suggests a role in auxin transport during maize inflorescence development. Plant and Cell Physiol 50:652-657 (2009)
  • Sun J, Xu Y, Ye S, Chen Q, Zhou W, Chen R, Liu F, Li X, Tietz O, Wu X, Jiang H, Cohen JD, Palme K, Li C  The Arabidopsis ASA1 gene is important for jasmonate-mediated regulation of auxin biosynthesis and transport during lateral root formation. Plant Cell 21:1495-1511 (2009)
  • Quint M, Barkawi LS, Fan K-T, Cohen JD, Gray WM Arabidopsis IAR4 modulates auxin response by regulating auxin homeostasis. Plant Physiol 150:748-758 (2009)
  • Negi S, Sukumar P,  Liu X, Cohen JD, Muday GK Genetic dissection of the role of ethylene in regulating auxin dependent lateral and adventitious root formation in tomato. Plant J 61:3-15 (2010)
  • Ludwig-Müller J, Denk K, Cohen JD, Quint M An inhibitor of tryptophan-dependent biosynthesis of indole-3-acetic acid alters seedling development in Arabidopsis.  J Plant Growth Regul 29:242-248 (2010)
  • Yang X-Y, Chen W-P, Rendahl AK, Hegeman AD, Gray WM, Cohen JD  Measuring the turnover rates of Arabidopsis proteins using deuterium oxide: an auxin signaling case study.  Plant J 63:680-695 (2010)
  • Liu F, Jiang H, Ye S, Chen W-P, Liang W, Xu Y, Sun B, Sun J, Wang Q, Cohen JD, Li C The Arabidopsis P450 protein CYP82C2 modulates jasmonate-induced root growth inhibition, defense gene expression, and indole glucosinolate biosynthesis. Cell Research 20:539-552 (2010)
  • Park S, Ozga JA, Cohen JD, Reinecke DM  Evidence of 4-Cl-IAA- and IAA-bound to proteins in pea fruit and seeds. J Plant Growth Regul 29:184-193 (2010)
  • Chen W-P, Yang X-Y, Hegeman AD, Gray WM, Cohen JD Microscale analysis of amino acids using gas chromatography-mass spectrometry after methyl chloroformate derivatization. J. Chromatogr B 878:2199-2208 (2010)
  • Barkawi LS, Cohen JD A method for concurrent diazomethane synthesis and substrate methylation in a 96-sample format.  Nature Protocols 5:1619–1626 (2010)
  • Ge L, Peer W, Robert S, Swarup R, Ye S, Prigge M, Cohen JD, Friml J, Murphy A, Tang D, Estelle M Arabidopsis ROOT UVB SENSITIVE2/WEAK AUXIN RESPONSE1 is required for polar auxin transport. Plant Cell 22:1749-1761 (2010)
  • Strader LC, Culler AH, Cohen JD, Bartel B Conversion of endogenous indole-3-butyric acid to indole-3-acetic acid drives cell expansion in Arabidopsis seedlings. Plant Physiol 153:1577-1586 (2010)
  • Nonhebel H, Yuan Y, Al-Amier H, Pieck M, Akor E, Ahamed A, Cohen JD, Celenza JL, Normanly J  Redirection of tryptophan metabolism in tobacco by ectopic expression of an Arabidopsis indolic glucosinolate biosynthetic gene. Phytochemistry 72:37-48 (2011)
  • Strader LC, Wheeler DL, Christensen SE, Berens JC, Cohen JD, Rampey RA, Bartel B Multiple facets of Arabidopsis seedling development require indole-3-butyric acid-derived auxin.  Plant Cell 23: 984–999 (2011)
  • Phillips KA, Skirpan AL, Liu X, Christensen A, Slewinski TL, Hudson C, Barazesh S, Cohen JD, Malcomber S, McSteen P vanishing tassel2 encodes a grass-specific tryptophan aminotransferase required for vegetative and reproductive development in maize. Plant Cell 23: 550–566 (2011)
  • Cheng N, Liu JZ, Liu X, Wu Q, Thompson SM, Lin J, Chang J, Whitham SA, Park S, Cohen JD, Hirschi KD Arabidopsis monothiol glutaredoxin, AtGRXS17, is essential for temperature-dependent postembryonic growth and development via modulating auxin response.  J Biol Chem 286:20398-20406 (2011)
  • Chen W-P, Yang X-Y, Harms GL, Gray WM, Hegeman AD, Cohen JD An automated growth enclosure for metabolic labeling of Arabidopsis thaliana with 13C-carbon dioxide - an in vivo labeling system for proteomics and metabolomics research. Proteome Science 9:9; doi: 10.1186/1477-5956-9-9 (2011)
  • Boswell PG, Schellenberg JR, Carr PW, Cohen JD, Hegeman AD  A study on retention “projection” as a supplementary means for compound identification by liquid chromatography-mass spectrometry capable of predicting retention with different gradients, flow rates, and instruments. J Chromatogr A 1218:6732-6741 (2011)
  • Boswell PG, Schellenberg JR, Carr PW, Cohen JD, Hegeman AD Easy and accurate high-performance liquid chromatography retention prediction with different gradients, flow rates, and instruments by back-calculation of gradient and flow rate profiles. J Chromatogr A 1218:6742-6749 (2011)
  • Liu X, Cohen JD, Gardner G Low fluence red light increases the transport and biosynthesis of auxin.  Plant Physiology 157:891-904 (2011)
  • Justen VL, Cohen JD, Gardner GM, Fritz VA Seasonal variation in glucosinolate accumulation in turnip cultivars grown with colored plastic mulches.  HortScience 46:1608-1614 (2011)
  • Franklin KA, Lee SH, Patel D, Kumar SV, Spartz AK, Gu C, Ye S, Yu P, Breen G, Cohen JD, Wigge PA, Gray WM PHYTOCHROME-INTERACTING FACTOR 4 (PIF4) regulates auxin biosynthesis at high temperature. Proc Nat Acad Sci USA 108: 20231-20235 (2011)
  • Keller CP, Grundstad ML, Evanoff MA, Keith JD, Lentz DS, Wagner SL, Culler AH, Cohen JD Auxin-induced leaf blade expansion in Arabidopsis requires both wounding and detachment. Plant Signaling & Behavior 6:1-11 (2011)
  • Menzel WI, Chen W-P, Hageman AD, Cohen JD Qualitative and quantitative screening of amino acids in plant tissues.  In: High Throughput Phenotyping in Plants: Methods and Protocols [Methods in Molecular Biology Series #918], Normanly J, ed.  Humana Press/Springer, New York, pp 165-178 (2012)
  • Dal Bosco C, Dovzhenko A, Liu X, Wörner N, Rensch T, Eismann M, Eimer S, Hegermann J, Paponov IA, Ruperti B, Heberle-Bors E, Touraev A, Cohen JD, Palme K The endoplasmic reticulum localized PIN8 is a pollen specific auxin carrier involved in intracellular auxin homeostasis. Plant Journal 71:860–870 (2012)
  • Liu X, Barkawi L, Gardner G, Cohen JD  Transport of indole-3-butyric acid and indole-3-acetic acid in Arabidopsis hypocotyls using stable isotope labeling. Plant Physiology 158:1988-2000 (2012)
  • Justen VL, Fritz VA, Cohen JD Seasonal variation in glucosinolate accumulation in turnips grown under photoselective nettings. Hort Environ Biotechnol 53:108-115 (2012)
  • Boswell PG, Carr PW, Cohen JD, Hegeman AD Easy and accurate calculation of programmed temperature gas chromatographic retention times by back-calculation of temperature and hold-up time profiles. Journal of Chromatography A 1263:179-188 (2012)
  • Liu X, Hegeman AD, Gardner G, Cohen JD Protocol: High-throughput and quantitative assays of auxin and auxin precursors from minute tissue samples. Plant Methods 2012, 8:31  doi:10.1186/1746-4811-8-31 (2012)
  • Yerramsetty V, Roe M, Cohen JD, Hegeman A, Ismail B Development of a simple, fast and accurate method for the direct quantification of selective estrogen receptor modulators in biological fluids using stable isotope dilution mass spectrometry, J Agric and Food Chem 61: 7028-7037 (2013)
  • Li W, Zhou Y, Liu X, Yu P, Cohen JD, Meyerowitz EM Flower development master regulator LEAFY controls auxin response pathways in floral primordia formation. Science Signaling 6: ra23 (2013) [DOI: 10.1126/scisignal.2003937]
  • DeMason DA, Chetty V, Barkawi LS, Liu X, Cohen JD Unifoliata-Afila interactions in pea leaf morphogenesis. American J Botany 100:478-495 (2013)
  • Yu H, Karampelias M, Robert S, Peer WA, Swarup R, Ye S, Ge L, Cohen JD, Murphy A, Friml J, Estelle M ROOT ULTRAVIOLET B-SENSITIVE1/WEAK AUXIN RESPONSE3 is essential for polar auxin transport in Arabidopsis. Plant Physiology 162:965-976 (2013)
  • Mazhar S, Cohen JD, Hasnain S Auxin producing non-heterocystous Cyanobacteria and their impact on the growth and endogenous auxin homeostasis of wheat. Journal of Basic Microbiology 53:996-1003 (2013) DOI: 10.1002/jobm.201100563.
  • Wilson MB, Spivak M, Hegeman AD, Rendahl A, Cohen JD Metabolomics reveals the origins of antimicrobial plant resins collected by honey bees. PLoS ONE 8(10): e77512. doi:10.1371/journal.pone.0077512 (2013)
  • Roe M, Cohen JD, Hegeman AD  Regioselective solvent-phase deuteration of polyphenolic compounds informs their identification by mass spectrometry.  Anal Biochem. 452:76-85 (2014)
  • Tivendale ND, Ross JJ, Cohen JD The shifting paradigms of auxin biosynthesis. Trends in Plant Science 19:44-51 (2014)
  • Roe MR, Cohen JD, and Hegeman AD Targeted deuteration of polyphenolics for their qualitative and quantitative metabolomic analysis in plant-derived extracts, Sriram G. Ed. Methods Mol Biol.1083:17-29 (2014)
  • Spiess GM, Hausman A, Yu P, Cohen JD, Rampey RA, Zolman BK. Auxin input pathway disruptions are mitigated by changes in auxin biosynthetic gene expression in Arabidopsis. Plant Physiol. 165:1092-1104 (2014)
  • Yu P, Hegeman AD, Cohen JD A facile means for the identification of indolic compounds from plant tissues.  Plant Journal 79:1065–1075 (2014)
  • Yu P, Lor P, Ludwig-Müller J, Hegeman AD, Cohen JD Quantitative evaluation of IAA conjugate pools in Arabidopsis thaliana. Planta 241:539-548 (2015)
  • Wilson MB, Brinkman D, Spivak M, Gardner G, Cohen JD Regional variation in composition and antimicrobial activity of U.S. propolis against Paenibacillus larvae and Ascopheara apis. Journal of Invertebrate Pathology 124:44-50 (2015)
  • Shi Y-F, Wang D-I, Wang C, Culler AH, Kreiser MA, Suresh J, Cohen JD, Pan J, Baker B, and Liu J-Z Loss of GSNOR1 function leads to compromised auxin signaling and polar auxin transport. Molecular Plant 8:1350-1365 (2015)
  • Tivendale ND, Cohen JD Analytical history of auxin.  J. Plant Growth Regulation 34:708–722 (2015)
  • Fan K-T, Rendahl A, Chen W-P, Freund D, Gray W, Cohen JD, Hegeman A Proteome scale-protein turnover analysis using high resolution mass spectrometric data from stable-isotope labeled plants. Journal of Proteome Research 15:851–867 (2016) DOI: 10.1021/acs.jproteome.5b00772
  • Kreiser M, Giblin C, Murphy R, Fiesel P, Braun L, Johnson G, Wyse D, Cohen JD Conversion of indole-3-butyric acid to indole-3-acetic acid in shoot tissue of hazelnut (Corylus) and elm (Ulmus). J Plant Growth Regulation 35:710-721 (2016) DOI: 10.1007/s00344-016-9574-5
  • Tivendale N, Jewett EM, Hegeman AD, Cohen JD Extraction, purification, methylation and GC-MS analysis of short-chain carboxylic acids for metabolic flux analysis. Journal of Chromatography B 1928:165-174 (2016)
  • Pincelli-Souza RP, Tillmann M, Esler M, Alves CCD, Cohen JD Hybrid hazelnut: micropropagation, rooting and acclimatization.  Acta Hort (in press)
  • Freund DM, Martin AC, Cohen JD, Hegeman AD Direct detection of surface localized specialized metabolites from Glycyrrhiza lepidota (American licorice) by leaf spray mass spectrometry. Planta (online: DOI 10.1007/s00425-017-2782-9) (2017)
  • Wilson M, Pawlus AD, Brinkman D, Gardner G, Hegeman AD, Spivak M, Cohen JD 3-acyl dihydroflavonols from poplar resins collected by honey bees are active against the bee pathogens Paenibacillus larvae and Ascosphaera apis. Phytochemistry 138:83-92 (2017)
  • Abate-Pella D, Freund DM, Slovin JP, Hegeman AD, and Cohen JD An improved method for fast and selective separation of carotenoids by LC-MS. J Chromatography B 1067:34-37 (doi.org/10.1016/j.jchromb.2017.09.039) (2017)
  • Freund DM, Martin AC, Cohen JD, Hegeman AD Direct detection of surface localized specialized metabolites from Glycyrrhiza lepidota (American licorice) by leaf spray mass spectrometry. Planta 247:267-275 (2018)
  • González-Villagra J, Rodrigues-Salvador A, Nunes-Nesi A, Cohen JD, Reyes-Díaz MM Age-related mechanism and its relationship with secondary metabolism and abscisic acid in Aristotelia chilensis plants subjected to drought stress. Plant Physiology and Biochem 124:136-145 (2018)
  • Muñoz-Sanhueza LG, Lee YK, Tillmann M, Cohen JD, Hvoslef-Eide AK Auxin analysis using laser microdissected plant tissues sections.  BMC Plant Biology (in press, 6/15/18)
  • Pincelli-Souza RP, Tillmann M, Esler M, Alves CCD, Cohen JD Hybrid hazelnut: micropropagation, rooting and acclimatization. Proc. III Int. Symp. on Woody Ornamentals of the Temperate Zone, Ed.: S.C. Hokanson,  Acta Hort. 1191: 113-120 DOI 10.17660/ActaHortic.2018.1191.16 (2018)
  • Evans EM, Freund DM, Sondervan VM, Cohen JD, Hegeman AD Metabolic patterns in Spirodela polyrhiza revealed by 15N stable isotope labeling of amino acids in photoautotrophic, heterotrophic, and mixotrophic growth conditions. Frontiers in Chemistry 6:191 (2018) https://www.frontiersin.org/article/10.3389/fchem.2018.00191
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